PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON78996.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

MYB

Protein Properties

Length: 242aa MW: 27048.1 Da PI: 7.037

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON78996.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57	4.6e-18	8	53	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l ++vkq+G+++W++I+ ++ gR++k+c++rw + PON78996.1 8 KGSWSPQEDATLMKLVKQHGPRNWSLISTGIQ-GRSGKSCRLRWCNQ 53 799***************************.*********985 PP
2	Myb_DNA-binding	34.8	3.7e-11	62	94	3	37
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 ++T+ Ed +++a++++G++ W+tIar ++ gRt PON78996.1 62 PFTPAEDATIIRAHALHGNK-WATIARLLP-GRTX 94 89****************.*****.96 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MKGEDRIKGS WSPQEDATLM KLVKQHGPRN WSLISTGIQG RSGKSCRLRW CNQLSPSVQH 60 RPFTPAEDAT IIRAHALHGN KWATIARLLP GRTXRRRRAT ASASSDSNSP PKGLGPEEEE 120 DESSESEPDP TVKRRRLRPS PERAGGIETS LTLSPPGESV VSVPSAEEKV ENDVVLKREE 180 AEAVAVGEEE RCTVDMEMEE TCLVTIMQRM IAQEVRNYMD NLRAQDGLRF GFRTSVHKDP 240 YN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	137	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	2e-41	MYB family protein