PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON80308.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C3H

Protein Properties

Length: 486aa MW: 50729.5 Da PI: 8.2653

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON80308.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.9	1.4e-12	50	75	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C f++rtG+C yG+rC+F+H++ PON80308.1 50 DEADCIFYLRTGYCGYGSRCRFNHPR 75 6799********************96 PP
2	zf-CCCH	39	1.3e-12	97	121	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f+rtGtCk+G++Ck++H++ PON80308.1 97 QPVCQYFMRTGTCKFGASCKYHHPR 121 689********************96 PP
3	zf-CCCH	36.4	8.5e-12	142	167	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G++CkF+H++ PON80308.1 142 GEKECSYYVKTGQCKFGASCKFHHPQ 167 7899********************97 PP
4	zf-CCCH	37.1	5.5e-12	309	334	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++C+++H+p PON80308.1 309 GQQDCQYYMRTGDCKFGSSCRYHHPP 334 6789********************97 PP
5	zf-CCCH	35.3	2e-11	356	379	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +lC+++a+ G Ck+G+ CkF H+ PON80308.1 356 APLCSHYAQRGVCKFGPACKFDHP 379 68*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
MERYGRATTE GGSLSDLSPG WTGTGPETGL EEAVWQLGLG GEELYPERPD EADCIFYLRT 60 GYCGYGSRCR FNHPRDRAAV MGVARAGGGE FPERVGQPVC QYFMRTGTCK FGASCKYHHP 120 RQGGGSAGPV SLNYDGYPLR PGEKECSYYV KTGQCKFGAS CKFHHPQSAG MQLHVPSPAT 180 PVPPVPAPVP AHTLYPPMQS PSGSSSQQYG VVVARPSLVQ GSYVQSPYGP VLISPGMVPF 240 PGWGGSYMAS VSPLPSPSNQ PPVGSGQVYG VTQLSHSAPP YTGPYPPGAS PAGPSISSQK 300 EHSFPERPGQ QDCQYYMRTG DCKFGSSCRY HHPPDIIAPK TTVNLSSAGL PMRPGAPLCS 360 HYAQRGVCKF GPACKFDHPV GTLSYSPSAS SLSDMPVAPY PVGSAVGTLA PSSSSSDSRP 420 ELSLGSTKDS TSARMSSSMS SSSGSVGSTF SKGGPASHVS LQQPAQNPGT STGGNASTSS 480 ESRTSS

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

MERYGRATTE GGSLSDLSPG WTGTGPETGL EEAVWQLGLG GEELYPERPD EADCIFYLRT  60
GYCGYGSRCR FNHPRDRAAV MGVARAGGGE FPERVGQPVC QYFMRTGTCK FGASCKYHHP  120
RQGGGSAGPV SLNYDGYPLR PGEKECSYYV KTGQCKFGAS CKFHHPQSAG MQLHVPSPAT  180
PVPPVPAPVP AHTLYPPMQS PSGSSSQQYG VVVARPSLVQ GSYVQSPYGP VLISPGMVPF  240
PGWGGSYMAS VSPLPSPSNQ PPVGSGQVYG VTQLSHSAPP YTGPYPPGAS PAGPSISSQK  300
EHSFPERPGQ QDCQYYMRTG DCKFGSSCRY HHPPDIIAPK TTVNLSSAGL PMRPGAPLCS  360
HYAQRGVCKF GPACKFDHPV GTLSYSPSAS SLSDMPVAPY PVGSAVGTLA PSSSSSDSRP  420
ELSLGSTKDS TSARMSSSMS SSSGSVGSTF SKGGPASHVS LQQPAQNPGT STGGNASTSS  480
ESRTSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06410.1	1e-133	C3H family protein