PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON80378.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family NF-YC
Protein Properties Length: 204aa    MW: 23109.2 Da    PI: 10.5771
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON80378.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC45.91.2e-1495186899
       NF-YC   8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                 ++ e+++d k +++P+ r+++i+++++   +is ea  l+ ka e f+ ++   ++  a + ++++l    ++++v++ + +dfl d vp++
  PON80378.1  95 EEFEEKEDAKMNRFPMERVRRIIRSEDSDMRISNEAVFLVNKATEKFLEKFCGEAYASAVKDRKKSLAYKHLSSVVNKRKRYDFLSDFVPEK 186
                 57899********************999999**********************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
MASSKKSVSE KRSKETKTKK KPSKESTKKK ASKGSSAKRK NDKKKTTNGA VNEDEVPPTP  60
SSSSDSQAKV ENGVEVTQNG TSNKKPKKGK RERKEEFEEK EDAKMNRFPM ERVRRIIRSE  120
DSDMRISNEA VFLVNKATEK FLEKFCGEAY ASAVKDRKKS LAYKHLSSVV NKRKRYDFLS  180
DFVPEKIKAE DALAERKLLE PEAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157175RKKSLAYKHLSSVVNKRKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.13e-34NF-YC family protein