PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON81351.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 392aa MW: 44355.1 Da PI: 7.488

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON81351.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18	8.2e-06	219	238	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + Cp C+ksF+r nL+ H+ PON81351.1 219 FHCPLCSKSFNRYNNLQMHM 238 78*****************9 PP
2	zf-C2H2	15.2	6.2e-05	303	325	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k+F k + ++H +++ PON81351.1 303 FRCRKCDKPFAVKGDWRTHEKNC 325 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MTNPHSNLFN GWINFISLHP YGHSPFTSPN YNSSNTTTTN NNNIHCFNNS NLLPHHANCS 60 NNQQLISRKY QLPYYSFSSD NNNINVLSSS LPFKEALPLI DKLKPLGNTP DHHHQQQLLS 120 SSTKTEDQAG SDHHNKNDDD DDADADEKTR VTVALHIGLP RPNSDEAGVG SGVMADIKEL 180 RGVMSSDHVV CSWDRQGEAT SHPHWIPTPS QILVGPTQFH CPLCSKSFNR YNNLQMHMWG 240 HGSQYRKGPE SLKGSQPTAM MRVPCYCCWP GCKHNISHPR ARPLKDFRTL QTHYKRKHGS 300 KPFRCRKCDK PFAVKGDWRT HEKNCGKIWY CICGSDFKHK RSLKDHVKAF GRGHAAFDDH 360 LQCLDDDDDN DEDEPASQIE QDASCSPPSY DN

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MTNPHSNLFN GWINFISLHP YGHSPFTSPN YNSSNTTTTN NNNIHCFNNS NLLPHHANCS  60
NNQQLISRKY QLPYYSFSSD NNNINVLSSS LPFKEALPLI DKLKPLGNTP DHHHQQQLLS  120
SSTKTEDQAG SDHHNKNDDD DDADADEKTR VTVALHIGLP RPNSDEAGVG SGVMADIKEL  180
RGVMSSDHVV CSWDRQGEAT SHPHWIPTPS QILVGPTQFH CPLCSKSFNR YNNLQMHMWG  240
HGSQYRKGPE SLKGSQPTAM MRVPCYCCWP GCKHNISHPR ARPLKDFRTL QTHYKRKHGS  300
KPFRCRKCDK PFAVKGDWRT HEKNCGKIWY CICGSDFKHK RSLKDHVKAF GRGHAAFDDH  360
LQCLDDDDDN DEDEPASQIE QDASCSPPSY DN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51220.1	1e-104	C2H2 family protein