PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON81591.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family LBD
Protein Properties Length: 246aa    MW: 27274.2 Da    PI: 8.7419
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON81591.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260113.11.9e-3523121198
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 aCaaCk++r+kC ++C+lapyfpae++++f++vhk+FG+snv+k++k++ ++e+r++a++slv+eA +r++dPv G ++ ++k+  +l+  k++l+++ 
  PON81591.1  23 ACAACKHQRKKCHEGCILAPYFPAERSRDFQAVHKVFGVSNVTKMVKNIvDDEDRRKAVDSLVWEASCRQKDPVLGPYAEYRKVYDELKIYKSQLNQRS 121
                 7***********************************************967777***************************************999875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MQRNTSTTTT KVGGATAGSA QPACAACKHQ RKKCHEGCIL APYFPAERSR DFQAVHKVFG  60
VSNVTKMVKN IVDDEDRRKA VDSLVWEASC RQKDPVLGPY AEYRKVYDEL KIYKSQLNQR  120
SASAYKSLSG LVGWNSPNGN INGHNGMVNG VVNSNSLSYN FHDNGNGMVD QSPFCAYTSS  180
YGQITTPEKI RQEKNNVDHS VVPVVLQQNQ QHYSINGFNE QYYLSGQFNQ VNTSKTTEST  240
LWDGGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.17e-43LBD family protein