PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON82096.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MIKC_MADS
Protein Properties Length: 254aa    MW: 29179.2 Da    PI: 8.8724
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON82096.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.71.7e-29959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+ rqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl+e+ss
  PON82096.1  9 KRIENKISRQVTFSKRRSGLLKKAHEISVLCDADVALIVFSNKGKLFEFSS 59
                79***********************************************96 PP
2K-box96.73.6e-32841759100
       K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  +e++++s++ e+ kL  +ie Lqr++R+ lGedL++L+l+eLq++eqq++ +lk++R++Kn+l+ e i+e+qkk k+lqeen+ ++kkl+e
  PON82096.1  84 SSESQESSWCLEFPKLTTRIEVLQRNLRNCLGEDLDPLNLRELQNIEQQIDVGLKRVRTRKNQLMNETISEMQKKAKALQEENNLISKKLKE 175
                 7899999**********************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MGRGRVELKR IENKISRQVT FSKRRSGLLK KAHEISVLCD ADVALIVFSN KGKLFEFSSE  60
SSMETILERY DRHSHAQRQL VPTSSESQES SWCLEFPKLT TRIEVLQRNL RNCLGEDLDP  120
LNLRELQNIE QQIDVGLKRV RTRKNQLMNE TISEMQKKAK ALQEENNLIS KKLKENENTL  180
ADQSTNWDQQ VNITSPNTST LVLLAPPPRT RSLPSLTIGG TFQEKEMTEE DSEIQAQPAT  240
NISIPPWMLR HLNR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.12e-85MIKC_MADS family protein