PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON82344.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 407aa MW: 46637.7 Da PI: 8.4603

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON82344.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0016	26	48	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++Cg + s ks+ +Hi tH PON82344.1 26 YFCEYCGICRSKKSLIASHILTH 48 78********************6 PP
2	zf-C2H2	20.8	1.1e-06	73	94	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg +F+ + +Lk+H+++H PON82344.1 73 TCEECGVTFKKPAYLKQHMQSH 94 6*******************99 PP
3	zf-C2H2	17.8	9.5e-06	128	152	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ dC s++rk++L+rH+ H PON82344.1 128 YVCSvdDCRSSYRRKDHLTRHLLGH 152 99*******************9877 PP
4	zf-C2H2	13.5	0.00021	157	182	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kC+ +C + Fs + n+krH r H PON82344.1 157 FKCSieNCRREFSIQGNMKRHVREqH 182 89*********************988 PP
5	zf-C2H2	17.5	1.2e-05	197	221	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk F+ s L++H +H PON82344.1 197 YVCQeaGCGKAFRFASKLRKHEDSH 221 99*******************9888 PP
6	zf-C2H2	16.5	2.3e-05	288	312	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC C+ +Fs+ksnL++H + H PON82344.1 288 KCMykGCDHTFSTKSNLNQHVKAaH 312 577779**************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MEKEAGGGGG GGEERPIFLF RDIRRYFCEY CGICRSKKSL IASHILTHHK EELDKARTEE 60 EGDATEGVKG SNTCEECGVT FKKPAYLKQH MQSHSPEYQV GRPPEKLHQE GLNHATFLVF 120 VILSQRPYVC SVDDCRSSYR RKDHLTRHLL GHKGKLFKCS IENCRREFSI QGNMKRHVRE 180 QHNGDNPSTS TESEKQYVCQ EAGCGKAFRF ASKLRKHEDS HVKLDSVEAV CAEPGCMKIF 240 TNEQCLKEHI HSCHQHITCE VCGTKQLKKN LKRHLRTHEE KGPVESIKCM YKGCDHTFST 300 KSNLNQHVKA AHLKQKPFVC SFSGCGARFS YKHVRDNHEK TGCHVYTHGD FEEADEQFRS 360 RPRGGRKRKY PTVEMLVRKR VSPPNQLDGS FGCFSNFLCQ DEEQDEP

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MEKEAGGGGG GGEERPIFLF RDIRRYFCEY CGICRSKKSL IASHILTHHK EELDKARTEE  60
EGDATEGVKG SNTCEECGVT FKKPAYLKQH MQSHSPEYQV GRPPEKLHQE GLNHATFLVF  120
VILSQRPYVC SVDDCRSSYR RKDHLTRHLL GHKGKLFKCS IENCRREFSI QGNMKRHVRE  180
QHNGDNPSTS TESEKQYVCQ EAGCGKAFRF ASKLRKHEDS HVKLDSVEAV CAEPGCMKIF  240
TNEQCLKEHI HSCHQHITCE VCGTKQLKKN LKRHLRTHEE KGPVESIKCM YKGCDHTFST  300
KSNLNQHVKA AHLKQKPFVC SFSGCGARFS YKHVRDNHEK TGCHVYTHGD FEEADEQFRS  360
RPRGGRKRKY PTVEMLVRKR VSPPNQLDGS FGCFSNFLCQ DEEQDEP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	361	369	RPRGGRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-143	C2H2 family protein