PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON82358.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 205aa    MW: 22756 Da    PI: 10.1034
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON82358.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.41.4e-211057249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 ++++  rqvtfskRr+g++KKA+EL +LC++ev v++fs+ gk y +
  PON82358.1 10 MVKDSNSRQVTFSKRRTGLFKKANELATLCGTEVGVVVFSPGGKPYSF 57
                5789999************************************98887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MGRRKIEIKM VKDSNSRQVT FSKRRTGLFK KANELATLCG TEVGVVVFSP GGKPYSFGQP  60
NIESIADRFL NQDDQPKATT KITASSSSKR RNKSEAAAME KLNQRLNDCM KQLNDEKLRG  120
ESLDVGITEA KGLFLGGNNE SKSIEELRKT ELEKLKEALE ELRERVKERA GEMEASSTLL  180
MLSSAIELPP KSEAGYVKTK VAKNV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-37M-type_MADS family protein