PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON82661.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GRAS
Protein Properties Length: 471aa    MW: 52462.5 Da    PI: 5.6413
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON82661.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS150.81.3e-46502412187
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPilkfshlt 97 
                 ++lLl+cA a++ +d + aq++++ l++ as+ gdp+qRl++ f++AL +r +r ++    +  + + s+  + ++l++++    ++++ P+++f++ +
  PON82661.1  50 EKLLLHCASALERNDVTFAQQVMWVLNNVASSVGDPNQRLTSWFLRALISRASRLCPASTTTAMSLNGSNGVVHRRLMSVTElagYVDLIPWHRFGYCA 148
                 689***************************************************7666555444444443445555555444599************** PP

        GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrle 187
                  N+ I +a++g ++vHi+Df+i++++QWp+L++aLa+RpegppslRiT+ +   ++    + + ee+g rL +f +  +vpfefnv+  ++++
  PON82661.1 149 SNSLIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPSFRPPVpplLNVSCEEVGLRLGNFSKFKEVPFEFNVIGINSTN 241
                 ************************************************98886666779999************************9555443 PP
2GRAS137.41.5e-42264462173373
        GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlld...esvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                   +f+f++l    l++l+ ++++++++Eal+Vn++  l +l+d   ++++ +s rd++L++vk+l+P++vvvv++++d+n++s+  r++ +++y +  f
  PON82661.1 264 SSSFQFELL----LTQLNASSINLQEDEALVVNFQNWLRYLPDgphKDGDYNSLRDTFLNVVKGLNPRIVVVVDEDSDLNTSSLTSRIATCFNYLWIPF 358
                 5689***98....999**********************9999711145556669********************************************* PP

        GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrp 366
                 d+le+ lp+es +ri +E   +g +i+n++  eg++r+er e+  + ++r+++aG+ ++p+ e+++k++k+ll +++ ++g++  ee++ lvl+Wk+++
  PON82661.1 359 DALETFLPKESCQRIEYESD-IGHKIENIIGFEGFQRVERLESGVTLSKRMRNAGYLSIPFAEDTVKEVKALLDEHAsGWGMKR-EEDHMLVLTWKGHN 455
                 ********************.********************************************************5555543.6678999******* PP

        GRAS 367 LvsvSaW 373
                  v+ +aW
  PON82661.1 456 SVFSTAW 462
                 ******* PP
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    
MKTELKGSTT TTSLSLQNPN YNNLFINTPQ SSLAGALRGC LGSLDGGCIE KLLLHCASAL  60
ERNDVTFAQQ VMWVLNNVAS SVGDPNQRLT SWFLRALISR ASRLCPASTT TAMSLNGSNG  120
VVHRRLMSVT ELAGYVDLIP WHRFGYCASN SLIFKAIQGY SKVHILDFSI THCMQWPTLI  180
DALAKRPEGP PSLRITVPSF RPPVPPLLNV SCEEVGLRLG NFSKFKEVPF EFNVIGINST  240
NSCSSSLSET ISRSSTNISE EEYSSSFQFE LLLTQLNASS INLQEDEALV VNFQNWLRYL  300
PDGPHKDGDY NSLRDTFLNV VKGLNPRIVV VVDEDSDLNT SSLTSRIATC FNYLWIPFDA  360
LETFLPKESC QRIEYESDIG HKIENIIGFE GFQRVERLES GVTLSKRMRN AGYLSIPFAE  420
DTVKEVKALL DEHASGWGMK REEDHMLVLT WKGHNSVFST AWVPNISGLE D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-117GRAS family protein