PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON82850.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family NF-YC
Protein Properties Length: 139aa    MW: 15744 Da    PI: 6.8036
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON82850.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC48.32.1e-156911397
       NF-YC 13 atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                ++ + + e+P  r+kki+k d+d+k++ +ea  l+s + +lf+  l+ rs   a e+kr+ +k   + aav+r + + dfl+d  p
  PON82850.1  6 EETMIRPEFPNGRVKKIMKLDQDIKKVNSEALFLISCSTQLFLGFLAERSADVATEKKRKVVKLEHVRAAVKRHQpTSDFLLDSLP 91
                45566789****************************************************************976489*****987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    
MAEEEEETMI RPEFPNGRVK KIMKLDQDIK KVNSEALFLI SCSTQLFLGF LAERSADVAT  60
EKKRKVVKLE HVRAAVKRHQ PTSDFLLDSL PPPSQPSDHP PSDRNRSVPV AEKPVPAGTR  120
RIDDFFRKPA NEAPIEIDE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.15e-39NF-YC family protein