PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON83002.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 25941.4 Da    PI: 7.0796
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON83002.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.22.8e-30959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+nrqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl eys+
  PON83002.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDADVALIVFSTKGKLAEYST 59
                79***********************************************96 PP
2K-box58.82.4e-20881681492
       K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRs..kKnellleqieelqkkekelqeenk 92 
                   s++ e+akLk++++ Lqr+q+h++Ge+L+sL+lkeLq+LeqqL+++lk+ ++   +n ll ++i+e  k   ++   n+
  PON83002.1  88 IGSWTLEHAKLKAKVDVLQRNQKHFMGEELDSLTLKELQSLEQQLDSALKHDKAlqEQNSLLSKKIKEKEKELARQALLNQ 168
                 56899*********************************************9886225667888888776665555554444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD ADVALIVFST KGKLAEYSTN  60
SSMLRILERY ERYSYAERQL LSDDPEPIGS WTLEHAKLKA KVDVLQRNQK HFMGEELDSL  120
TLKELQSLEQ QLDSALKHDK ALQEQNSLLS KKIKEKEKEL ARQALLNQQQ SNDADSSSVL  180
QPLPIQVVDI GVPPRGDNGE EEEVEETQHQ NRGNSQLLPW MLNNLNT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.14e-72MIKC_MADS family protein