PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON83004.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MIKC_MADS

Protein Properties

Length: 154aa MW: 17802.6 Da PI: 9.9688

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON83004.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.3	7.2e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaev++iifs++gklye++s PON83004.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	80.6	3.6e-27	82	147	9	74
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnelll 74 + ++++s++qe+ kLk+++e Lqr+qR+llGedL++L+ keL+qLe+qLe+sl++iRs+K +l+ PON83004.1 82 QPVNDSQSSYQEYLKLKARVEVLQRSQRNLLGEDLGPLNSKELEQLENQLETSLRHIRSTKVTFLF 147 4456789******************************************************99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVSLIIFSN RGKLYEFCSG 60 SSMLKTLEKY QKYSYGALEA SQPVNDSQSS YQEYLKLKAR VEVLQRSQRN LLGEDLGPLN 120 SKELEQLENQ LETSLRHIRS TKVTFLFIAI YIMV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15800.1	4e-78	MIKC_MADS family protein