PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON83044.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family Trihelix
Protein Properties Length: 659aa    MW: 73819.5 Da    PI: 6.582
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON83044.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.88.4e-3076159186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 rW++qe+laL+++r++m+ ++r+++lk+plWeevs+k+ + g++rs+k+Ckek+en+ k++k++keg+ ++t  + +t+++fdql 
  PON83044.1  76 RWPRQETLALLKIRQDMDATFRDSSLKGPLWEEVSRKLTALGYKRSAKKCKEKFENVYKYHKRTKEGRTGKT--DGKTYRFFDQLA 159
                 8********************************************************************975..5556******96 PP
2trihelix102.43.5e-32459544187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW+k ev+aLi++rr++e ++++   k+plWee+s  mr+ g+ rs+k+Ckekwen+nk++kk+k+++kkr se+s+tcpyf+ql+a
  PON83044.1 459 RWPKTEVQALINLRRSLELKYQEIGPKGPLWEEISTGMRKLGYDRSSKRCKEKWENINKYFKKVKDSSKKR-SEDSKTCPYFHQLDA 544
                 8*********************************************************************8.89999********85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    
MGDASIEAPV ATAAVPMVAV AAEDQVVLRH EEDGGEGEGE AGVGANLSTN SAEEDNKGGQ  60
NVDEGGGGDR SSGGNRWPRQ ETLALLKIRQ DMDATFRDSS LKGPLWEEVS RKLTALGYKR  120
SAKKCKEKFE NVYKYHKRTK EGRTGKTDGK TYRFFDQLAA FEQNHHPPPP QPPPKPQVIS  180
NPPTPWTTNP PPISNTTSTT THVSYHITLQ NPTTNIPSLV PPPPPPPPLP LPLPTSTTTT  240
NNNNNNNNPT ITNINTNNIS VFPPQTKPTN HNLHSSFPAA AGGGTNNNLF PSSSTSSSTA  300
SDEEFQARGH KRKRKWRDFF RKLTKEVIRK QEEMQKKFIE AVEKSEHARI AREEAWRVQE  360
MARVNREHEI LVQERSTAAA KDAAVIAFLQ KVSGVPQNSS KELLLIRDNH RDINSNSLAP  420
PPPPQPAAPP PPAPPRLSDN GENGNAVAAA PPLLRSSSRW PKTEVQALIN LRRSLELKYQ  480
EIGPKGPLWE EISTGMRKLG YDRSSKRCKE KWENINKYFK KVKDSSKKRS EDSKTCPYFH  540
QLDALYREKT TVKNNVVQNS NGISEKTHFG MEPLMVQPER QWPESSDHDH HHEEDDDEDE  600
EEDEEERDSS STELEEDHPN HNHNIRDDHD HRHDHHQQED GAGSYPIVDN KQSSMDMVE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119127KRSAKKCKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-62Trihelix family protein