PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON83048.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family Trihelix
Protein Properties Length: 660aa    MW: 72146.1 Da    PI: 5.6866
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON83048.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.49.4e-2942126187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW++qe+laL+++r++m+ ++r+++ k+plW+evs+k++e g++rs+k+Ckek+en+ k++k++keg+ ++  ++ +t+++fdqlea
  PON83048.1  42 RWPRQETLALLKIRSDMDVAFRDASVKGPLWDEVSRKLAELGYHRSAKKCKEKFENVFKYHKRTKEGRTGK--PDGKTYRFFDQLEA 126
                 8********************************************************************95..77779*******85 PP
2trihelix106.61.7e-33474559187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW+k ev+aLi++r++++ +++++  k+plWee+s++mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  PON83048.1 474 RWPKAEVHALIKLRTNLDAKYQENGPKGPLWEEISAAMRKLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 559
                 8*********************************************************************8.99***********85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    
MLGDSSGTGL GSSSGGDAAA AAAVGGGEDF LTGTDRSFGG NRWPRQETLA LLKIRSDMDV  60
AFRDASVKGP LWDEVSRKLA ELGYHRSAKK CKEKFENVFK YHKRTKEGRT GKPDGKTYRF  120
FDQLEALENQ LFSTTTSSPP PPAPATAAAQ PKAQAQALAM QAVAAVTTTT AATANTNNNP  180
PLPQNSTVPS ISTTTIPSQA TIMNLAFQSP FQAAPTNPTV LPVPPQPVAA VPMATTATNP  240
TFSSAAAAAA LRSISADLAS NSMTTSSTSS DEEMGEEETG GGGRRKRKRK WKDFFERLMK  300
EVIQRQEELQ KKFLEAVEKR EHERMVREEA WRMQEMSRIN REREILAQER SIAAAKDAAV  360
MSFLQKISEQ QNQNPAAVAA AAAANFNIPQ PPPPIIQPVQ STPPPPQPPP QPQPSTAAAA  420
APPPPRAVQP VIQNIESVPK SGHNTNNNNN GSNSNNNNNN TNNNFMAGSA SSSRWPKAEV  480
HALIKLRTNL DAKYQENGPK GPLWEEISAA MRKLGYNRNA KRCKEKWENI NKYFKKVKES  540
NKKRPEDSKT CPYFHQLDAL YREKNKYFDP AAAGQFAKPE NSVPLMVQPE QQWPPAAAAP  600
PPSGDRSRAE EMERVDQMDH DEDEEEDEEE DEDDDEEDEE GGNNYELVAN KPASTVNAAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284289RRKRKR
2284290RRKRKRK
3285290RKRKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-66Trihelix family protein