PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON83768.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 483aa MW: 53340.3 Da PI: 7.8071

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON83768.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.4	5.8e-06	84	106	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H PON83768.1 84 YVCEICNQGFQRDQNLQMHRRRH 106 9*********************9 PP
2	zf-C2H2	16.5	2.4e-05	161	183	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ PON83768.1 161 WVCDKCSKAYAVQSDYKAHLKTC 183 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
MLEKNNNTAS SSGAADPSSS SDHNHHHQNH YAFPNNSCEN GVNTNSNDNN NCNSKRKRRP 60 AGTPDPDAEV VSLSPKTLLE SDRYVCEICN QGFQRDQNLQ MHRRRHKVPW KLLKRETQEV 120 KKRVFVCPEP SCLHHDPCHA LGDLVGIKKH FRRKHSNHKQ WVCDKCSKAY AVQSDYKAHL 180 KTCGTRGHSC DCGRVFSRVE SFIEHQDSCT VRQVRPELQA LQSAATAAAC SSRTASSTSP 240 SSDANFGNIA APFPAGVVLN MPKPTEANMF LSSSSERAST SKHSITNIST NQHQQNLLEL 300 QLLPSSEALG RSMQNSSEEN YATHLKLSIG SFDAEKSELP NEPNSGTMRI SNGGVSATEP 360 VAALEVSRVR DFANEEMKLA MAEKSYAEEA RREAKRQIEM AEMEFTNAKR IRQQAQAELE 420 KAQLLREQAT KKVSSTILQI TCQSCKQQFQ TTPSAVGGPP DETTSLAMSY MSSATTEGEG 480 EGE

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

MLEKNNNTAS SSGAADPSSS SDHNHHHQNH YAFPNNSCEN GVNTNSNDNN NCNSKRKRRP  60
AGTPDPDAEV VSLSPKTLLE SDRYVCEICN QGFQRDQNLQ MHRRRHKVPW KLLKRETQEV  120
KKRVFVCPEP SCLHHDPCHA LGDLVGIKKH FRRKHSNHKQ WVCDKCSKAY AVQSDYKAHL  180
KTCGTRGHSC DCGRVFSRVE SFIEHQDSCT VRQVRPELQA LQSAATAAAC SSRTASSTSP  240
SSDANFGNIA APFPAGVVLN MPKPTEANMF LSSSSERAST SKHSITNIST NQHQQNLLEL  300
QLLPSSEALG RSMQNSSEEN YATHLKLSIG SFDAEKSELP NEPNSGTMRI SNGGVSATEP  360
VAALEVSRVR DFANEEMKLA MAEKSYAEEA RREAKRQIEM AEMEFTNAKR IRQQAQAELE  420
KAQLLREQAT KKVSSTILQI TCQSCKQQFQ TTPSAVGGPP DETTSLAMSY MSSATTEGEG  480
EGE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	55	60	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-113	C2H2 family protein