PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON83917.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

TCP

Protein Properties

Length: 560aa MW: 58818.3 Da PI: 8.1889

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON83917.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127	2e-39	165	297	2	104
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........... 88 a+ k++++++hTkv+gR+RR+R++a+caar+F+L++eL +++d++tieWLlqqa+pai+++tgt++++a+++ + s +ss+s+ s++ PON83917.1 165 APVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELSHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGSTLSAPpsksaphsfla 263 7789*****************************************************************999888888888886666666666676666 PP TCP 89 ...................kaaksaakskksqksa 104 + ++++++ q+++ PON83917.1 264 thhhphydegfahaglmgfH-HHHHHHQQQHQHQH 297 66666665666555555531.12222222222222 PP

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence
MDIADLQSNN KQNNNNNNNK KLHHQQQQKQ SSSSASQFVV PFDGRSSNPF MGSISIQAGL 60 TTTTSTPHGH GSTATPAGGV AAPAGSSSSS SSSSSNSSSS TSASTAPPHL VDASLAIATR 120 SESHPSINRP ATLVVDSSAK KNQQQQQQQQ QQQQLSIAPT TAAAAPVKRS TKDRHTKVDG 180 RGRRIRMPAT CAARVFQLTR ELSHKSDGET IEWLLQQAEP AIIAATGTGT IPANFSTLNI 240 SLRSSGSTLS APPSKSAPHS FLATHHHPHY DEGFAHAGLM GFHHHHHHHQ QQHQHQHQQP 300 PPLMTADQIA EALPSGGDSG GGGDSTENYM RKRFREDLFK ENSETQADQG GGGSPSNNNK 360 SFKSGGGGLQ LPKQQQDAAG SSGLLRPSNM LPATAMWAVA PAPTSGAGST FWMLPVSAGG 420 GVPPVAATTS GAGPSEHQMW TFPTPPASHG NTLQAPLHFM PRFNLPGNLE FQGGRGSTSP 480 LQLGSMLMQQ QQPPSQHLGL GVSESNLGML AALNAYSRAG GGGGGLNMNS DHQQSHPLEH 540 HHQHQPQATD SGDEDPNNSQ

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence

MDIADLQSNN KQNNNNNNNK KLHHQQQQKQ SSSSASQFVV PFDGRSSNPF MGSISIQAGL  60
TTTTSTPHGH GSTATPAGGV AAPAGSSSSS SSSSSNSSSS TSASTAPPHL VDASLAIATR  120
SESHPSINRP ATLVVDSSAK KNQQQQQQQQ QQQQLSIAPT TAAAAPVKRS TKDRHTKVDG  180
RGRRIRMPAT CAARVFQLTR ELSHKSDGET IEWLLQQAEP AIIAATGTGT IPANFSTLNI  240
SLRSSGSTLS APPSKSAPHS FLATHHHPHY DEGFAHAGLM GFHHHHHHHQ QQHQHQHQQP  300
PPLMTADQIA EALPSGGDSG GGGDSTENYM RKRFREDLFK ENSETQADQG GGGSPSNNNK  360
SFKSGGGGLQ LPKQQQDAAG SSGLLRPSNM LPATAMWAVA PAPTSGAGST FWMLPVSAGG  420
GVPPVAATTS GAGPSEHQMW TFPTPPASHG NTLQAPLHFM PRFNLPGNLE FQGGRGSTSP  480
LQLGSMLMQQ QQPPSQHLGL GVSESNLGML AALNAYSRAG GGGGGLNMNS DHQQSHPLEH  540
HHQHQPQATD SGDEDPNNSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	3e-63	TCP family protein