PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON83993.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 404aa MW: 44729.2 Da PI: 9.0966

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON83993.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.4	1.4e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l++++k++G g+W++ ++ g+ R++k+c++rw +yl PON83993.1 14 KGAWTKEEDQRLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	59.8	5.9e-19	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ +lG++ W++Ia++++ gRt++++k++w+++ PON83993.1 67 RGNFTEEEDELIINLHSLLGNK-WSLIASRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MGRSPCCEKE HTNKGAWTKE EDQRLINYIK LHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDELIIN LHSLLGNKWS LIASRLPGRT DNEIKNYWNT HIKRKLYSRG 120 IDPQTHRPLL LIPTTDTTTS TPPPKTSTTS TSPPPPTTIT STATVAASSS SSNSSSDDQN 180 IKLTMLMGKG SNNSSNNNMN MMMINTSNAN AKLNNHPHDD RVLIESNNST GSATSDHSNM 240 SSSTLTSSSE QLVFSHTVQG GLNLDLSIGL LPFRPTTSTT SIKLQPEPQI QQQKQQIIHK 300 QHDHYYFTYD HDDNNRKLLY GRIKNSTNIA QSCTERPSVL PAAAAALSTS TSITSSSVCL 360 CCRLGLQKNQ PCRCNSMPTS TLVTPPAAAL PTHNYIYTYY TTTT

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MGRSPCCEKE HTNKGAWTKE EDQRLINYIK LHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDELIIN LHSLLGNKWS LIASRLPGRT DNEIKNYWNT HIKRKLYSRG  120
IDPQTHRPLL LIPTTDTTTS TPPPKTSTTS TSPPPPTTIT STATVAASSS SSNSSSDDQN  180
IKLTMLMGKG SNNSSNNNMN MMMINTSNAN AKLNNHPHDD RVLIESNNST GSATSDHSNM  240
SSSTLTSSSE QLVFSHTVQG GLNLDLSIGL LPFRPTTSTT SIKLQPEPQI QQQKQQIIHK  300
QHDHYYFTYD HDDNNRKLLY GRIKNSTNIA QSCTERPSVL PAAAAALSTS TSITSSSVCL  360
CCRLGLQKNQ PCRCNSMPTS TLVTPPAAAL PTHNYIYTYY TTTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	2e-84	MYB family protein