PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON84301.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 390aa MW: 44165.5 Da PI: 7.6144

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON84301.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.3	8.3e-19	28	75	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W++I++ g+ R++k+c++rw +yl PON84301.1 28 RGLWSPEEDEKLIKYITTHGHGSWSSIPKLAGLQRCGKSCRLRWINYL 75 788*******************************************97 PP
2	Myb_DNA-binding	52.2	1.4e-16	81	124	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ ++d+++ lG++ W+ Ia++++ gRt++++k++w++ PON84301.1 81 KGSFSEEEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 124 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MLVISESELD QLNRNMVHQC CSKQKVKRGL WSPEEDEKLI KYITTHGHGS WSSIPKLAGL 60 QRCGKSCRLR WINYLRPDLK KGSFSEEEER TIIDVHRILG NRWAQIAKHL PGRTDNEVKN 120 FWNSCIKKKL IAQGLDPNTH NLLNIPSSKS NNTSAKKYYI HNKTTTNFSI AQPKRSTTTT 180 TTTTSISTSS VFSVNSRSNI SHTSMNIKAP ILTLPLVSPP HSYPSNPDDA HHLLQLESSI 240 MSNCTAHDHD QYDHNPNTVC NTTFQENNPT SSTALMESTI SHHSKGKFQS SGSPLNPPGF 300 ERIEETCLWD ISSFDHRKVT KQDEILLQQK RLEKASDEVE RSNINDGQNM EYYAPLETSN 360 FDLIDFPGST VDSGLMYCHL SPMDYVAWNC

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MLVISESELD QLNRNMVHQC CSKQKVKRGL WSPEEDEKLI KYITTHGHGS WSSIPKLAGL  60
QRCGKSCRLR WINYLRPDLK KGSFSEEEER TIIDVHRILG NRWAQIAKHL PGRTDNEVKN  120
FWNSCIKKKL IAQGLDPNTH NLLNIPSSKS NNTSAKKYYI HNKTTTNFSI AQPKRSTTTT  180
TTTTSISTSS VFSVNSRSNI SHTSMNIKAP ILTLPLVSPP HSYPSNPDDA HHLLQLESSI  240
MSNCTAHDHD QYDHNPNTVC NTTFQENNPT SSTALMESTI SHHSKGKFQS SGSPLNPPGF  300
ERIEETCLWD ISSFDHRKVT KQDEILLQQK RLEKASDEVE RSNINDGQNM EYYAPLETSN  360
FDLIDFPGST VDSGLMYCHL SPMDYVAWNC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	1e-82	MYB family protein