PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON84368.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

WRKY

Protein Properties

Length: 624aa MW: 69780.9 Da PI: 6.8725

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON84368.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	80	2.6e-25	115	172	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgy Wr YG K+ kgs +pr+YY+Ct+++C+vkkkvers+ +++v+ei+Y+g+H+h+k PON84368.1 115 DDGYYWRLYGTKQEKGSAYPRKYYKCTYPNCQVKKKVERSH-EGHVTEIVYKGSHDHPK 172 8**************************************.*************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 624 aa Download sequence
MEDGIRSPPN PFTDAPLGSP QSKWISFSLN DLDISDLDEF FKDMDTISFA LKPVMNSGAS 60 CFRGAAASKM TTSATLSTGA EKQNEKNLQL QADEERDQNG SGDCSARGGG ATTSDDGYYW 120 RLYGTKQEKG SAYPRKYYKC TYPNCQVKKK VERSHEGHVT EIVYKGSHDH PKPPKCTLAI 180 GSSTPQANMH AGERLESPGT EERYTHRKTL DLQLTNFEAS YLEYSQLDSS TRQDAEKIKE 240 VLGQACQRYR LPLAQTWLRC CNRLFQQGLN NNNNNDQCAY STLDHAFYAG NPLVWSFHNF 300 CSNHHLLKGQ GIVGEAFMTY KPRFSTDVTS YCEAEYPLSH SAKMHGIRGA IAIPACWDTS 360 LLPFYPTAPD YVLELFLPFD CTHVEEQKTI VKSLTSWIAL HLPTVAVLEL EQESGCRQGN 420 DIGPTPRSVT TFSEVQQSTG TNELLLLPNE NLKETLDGNL PKESDRNNEK RAETTPSIRH 480 ALVVDDIATY SQTRSKFSSV AESETNEEIR RPSCTEKTTD LPADGLEDAG RTTSPGKSTG 540 SSRGKRDPTW KYCFSIEGNS HGVKCRFCNL VIQGGGITRF KLHLASSDPS KNVKKCPNVP 600 HEIKVEVEEW IRRKDNKRKQ LSWI

Sequence ? help Back to Top

Protein Sequence Length: 624 aa Download sequence

MEDGIRSPPN PFTDAPLGSP QSKWISFSLN DLDISDLDEF FKDMDTISFA LKPVMNSGAS  60
CFRGAAASKM TTSATLSTGA EKQNEKNLQL QADEERDQNG SGDCSARGGG ATTSDDGYYW  120
RLYGTKQEKG SAYPRKYYKC TYPNCQVKKK VERSHEGHVT EIVYKGSHDH PKPPKCTLAI  180
GSSTPQANMH AGERLESPGT EERYTHRKTL DLQLTNFEAS YLEYSQLDSS TRQDAEKIKE  240
VLGQACQRYR LPLAQTWLRC CNRLFQQGLN NNNNNDQCAY STLDHAFYAG NPLVWSFHNF  300
CSNHHLLKGQ GIVGEAFMTY KPRFSTDVTS YCEAEYPLSH SAKMHGIRGA IAIPACWDTS  360
LLPFYPTAPD YVLELFLPFD CTHVEEQKTI VKSLTSWIAL HLPTVAVLEL EQESGCRQGN  420
DIGPTPRSVT TFSEVQQSTG TNELLLLPNE NLKETLDGNL PKESDRNNEK RAETTPSIRH  480
ALVVDDIATY SQTRSKFSSV AESETNEEIR RPSCTEKTTD LPADGLEDAG RTTSPGKSTG  540
SSRGKRDPTW KYCFSIEGNS HGVKCRFCNL VIQGGGITRF KLHLASSDPS KNVKKCPNVP  600
HEIKVEVEEW IRRKDNKRKQ LSWI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	612	620	RRKDNKRKQ
2	613	621	RRKDNKRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	1e-38	Nin-like family protein