PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON84439.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MYB_related
Protein Properties Length: 290aa    MW: 31984.8 Da    PI: 6.7968
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON84439.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.1e-13555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT eE+e l  +v+++G+g Wk I r         +R+  ++k++w++
       PON84439.1  5 KQKWTSEEEEALRAGVEKHGTGKWKDIQRDPEfnpylVNRSNIDLKDKWRN 55
                     79************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    
MGNPKQKWTS EEEEALRAGV EKHGTGKWKD IQRDPEFNPY LVNRSNIDLK DKWRNMSCSA  60
NGQGHREKSR TVKAKTNSDA PATQVSTAQT AVAVPVVRDA AVAPNSDDST KAVPDGKNSS  120
QLVVLTPDKY NTVIFEALST LKEPNGSDTS AILSFIEQRH EVPQNFRRVL STRLRRLVAQ  180
DKIEKIQNCY KMKSDADASF GTKTPAPKQE SQPRPLQTAV YRFPSTDVVD EAAVAAAYKI  240
AEAENRSFVA AEAVKEAERI SEMAEDSESI LQLAKEIFEK CSQGETVLAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.14e-55MYB_related family protein