PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON84752.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 26140.7 Da    PI: 7.0496
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON84752.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.61.5e-27959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+i+n + rqvtfskRr g+ KKA+ELSvLCda+v +iifsstgkl+ey+s
  PON84752.1  9 KKIDNATARQVTFSKRRRGLVKKAHELSVLCDADVGLIIFSSTGKLFEYAS 59
                68***********************************************86 PP
2K-box52.32.4e-18911721899
       K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 ++++++L kei +  +++R+l Ge+L+ L+++eLqqLe+ Le +l+++ +kK e ++++i++lq+k  +l een++Lr+++ 
  PON84752.1  91 NNNYSRLCKEIAEKSHQLRQLRGEELQGLNIEELQQLEKSLEAGLNRVMEKKGEKIMKEIDDLQRKGMKLMEENERLRQQVV 172
                 67899999***9999****************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MAREKIQIKK IDNATARQVT FSKRRRGLVK KAHELSVLCD ADVGLIIFSS TGKLFEYAST  60
SMKEILERHH LHSKNLEKLE QPSLKLQLVE NNNYSRLCKE IAEKSHQLRQ LRGEELQGLN  120
IEELQQLEKS LEAGLNRVME KKGEKIMKEI DDLQRKGMKL MEENERLRQQ VVEVSDGRTK  180
QVVTDSENVI TEEGQSSESV TNVCNSNGPP QDYDSTTSDT SLKLGLPYAG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-106MIKC_MADS family protein