PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON85028.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 370aa MW: 42890.6 Da PI: 8.36

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON85028.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0014	18	40	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++Cg + s ks+ ++Hi tH PON85028.1 18 YFCEYCGICRSKKSLITSHILTH 40 78********************6 PP
2	zf-C2H2	18.7	4.6e-06	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cg + + + +Lk+H+++H PON85028.1 63 YTCEECGVTLKKPAYLKQHMQSH 85 9********************99 PP
3	zf-C2H2	17.9	8.4e-06	91	115	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ dC s++rk++L+rH+ H PON85028.1 91 YVCSvdDCRSSYRRKDHLTRHLLGH 115 99*******************9877 PP
4	zf-C2H2	14.9	7.5e-05	120	145	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +C++ Fs + n+krH + H PON85028.1 120 FKCPieNCKREFSIQGNMKRHVKEqH 145 89********************9988 PP
5	zf-C2H2	17.6	1e-05	160	184	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk F+ s L++H +H PON85028.1 160 YVCQeaGCGKAFRFASKLRKHEDSH 184 99*******************9888 PP
6	zf-C2H2	17.1	1.5e-05	251	275	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC C+ sFs+ksnL++H + H PON85028.1 251 KCMykGCDHSFSTKSNLNQHVKAaH 275 577779**************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MDEAGGEERP IFRDIRRYFC EYCGICRSKK SLITSHILTH HKEELDEARA EEDNATEGVK 60 GSYTCEECGV TLKKPAYLKQ HMQSHSTERP YVCSVDDCRS SYRRKDHLTR HLLGHKGILF 120 KCPIENCKRE FSIQGNMKRH VKEQHNGDHP STSTESEKQY VCQEAGCGKA FRFASKLRKH 180 EDSHVKLESV EAVCAEPGCM KIFTNEQCLK EHIHSCHQHI ACEICGTKQL KKNLKRHLRT 240 HEEKGPFERI KCMYKGCDHS FSTKSNLNQH VKAAHLKQKP FACSFSGCGL RFSYKHVRDN 300 HEKTGCHVYT HGDFEEADEQ FRSRPRGGRK RKYPTVEMLV RKRVSPPNQL DGPFGCFLNF 360 LWQDEEQDEP

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MDEAGGEERP IFRDIRRYFC EYCGICRSKK SLITSHILTH HKEELDEARA EEDNATEGVK  60
GSYTCEECGV TLKKPAYLKQ HMQSHSTERP YVCSVDDCRS SYRRKDHLTR HLLGHKGILF  120
KCPIENCKRE FSIQGNMKRH VKEQHNGDHP STSTESEKQY VCQEAGCGKA FRFASKLRKH  180
EDSHVKLESV EAVCAEPGCM KIFTNEQCLK EHIHSCHQHI ACEICGTKQL KKNLKRHLRT  240
HEEKGPFERI KCMYKGCDHS FSTKSNLNQH VKAAHLKQKP FACSFSGCGL RFSYKHVRDN  300
HEKTGCHVYT HGDFEEADEQ FRSRPRGGRK RKYPTVEMLV RKRVSPPNQL DGPFGCFLNF  360
LWQDEEQDEP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	324	332	RPRGGRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-147	C2H2 family protein