PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON85042.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MYB_related
Protein Properties Length: 88aa    MW: 10134.8 Da    PI: 10.2693
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON85042.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.31.8e-181360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll++++ ++G g W++++++ g++R++k+c++rw++yl
       PON85042.1 13 KGAWTPEEDILLKECIDMYGEGKWHLVPARAGLNRCRKSCRLRWLNYL 60
                     79*********************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    
MEAGGSSARG VRKGAWTPEE DILLKECIDM YGEGKWHLVP ARAGLNRCRK SCRLRWLNYL  60
KPDIKRGKFT VDEVDLILRL HKLLGNRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.14e-45MYB family protein