PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON85170.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MIKC_MADS

Protein Properties

Length: 217aa MW: 25004.7 Da PI: 10.5326

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON85170.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92.2	2.4e-29	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gkl e++s PON85170.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLNEFAS 59 8***********************************************86 PP
2	K-box	90.3	3.4e-30	75	171	2	98
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++++++ e+++++++qe+a + ++ie L+ ++R+llGe+L+s+s++eLqq+eqqLeks++kiR++Kn++++eqie+l++kek l +en +L++k+ PON85170.1 75 DNQTNNKSVEQNMQHMKQEAAAMMRKIELLEISKRKLLGEGLGSCSVEELQQVEQQLEKSVSKIRARKNQVFREQIEQLKEKEKVLISENSRLSEKY 171 55677779999**********************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLNEFASS 60 SMQATIERYR RHTKDNQTNN KSVEQNMQHM KQEAAAMMRK IELLEISKRK LLGEGLGSCS 120 VEELQQVEQQ LEKSVSKIRA RKNQVFREQI EQLKEKEKVL ISENSRLSEK YGIKPIQALN 180 NQRENLANTE SNPSSDVETE LFIGLPETRL KRLPSKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	5e-89	MIKC_MADS family protein