PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON85371.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GATA
Protein Properties Length: 323aa    MW: 35855.4 Da    PI: 9.7808
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON85371.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.6e-19183216134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 C+ C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  PON85371.1 183 CADCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 216
                 *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MDPPNNHNYS STPSSFLEIK EDQTSSSLSL SCPAFMNPTQ DQGHFYYSEP QHIQLFPQEV  60
DKINIVSSGG SCDHRPRAEE GHEFVDHDLK LSIWKSSEDH TTTNDVKINN IHGDENINSV  120
KWMSSKMRMM RKMIMNPDQT ATNNTPLDFT TQKFEVAKNK HPGSPTDHST SSSSNNNTTI  180
RVCADCNTTK TPLWRSGPRG PKSLCNACGI RQRKARRAMA AAAAAANGTI LAVDAPSMKN  240
STAKVQIKEK KSRSIGGTSN GCLPFKKRCK LTRPPSRGRR KNKLCFEDLI NVSKNSAFQR  300
VFPQDERDAA ILLMALSYGL VHG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.11e-33GATA family protein