PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON85785.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 390aa MW: 43706.4 Da PI: 6.3984

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON85785.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59	1.1e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lvd+++++G g+W+t ++ g+ R++k+c++rw +yl PON85785.1 14 KGPWTPEEDQNLVDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.3	3e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ PON85785.1 67 RGRFSFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MGRAPCCDKN GLKKGPWTPE EDQNLVDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG 120 IDPVTHSPRL DLLDLSSILS SSLYNASQHH HHQMNNMTRF LGVQPVVNPE LLKLATSLMS 180 SSSSSQRGSN QNSNFYLPSS HEVDQNQLCG TIHNNNPQLQ QVLLQPNQLH HEISAAPGCP 240 TLDNMPCVPL SDEGHDLSNL TNFSSPSSQI SEWQSSTTAT TSGMLSNFNE DCVPCLPSYG 300 AYGNYGHDDH HYQTITVVDP STESFQSNNS NQNFGFTTSV LSTPSSSPTT VLNSNSTTYL 360 TSSTEDERES YCSSMLKFEI SDILDVNEFM

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MGRAPCCDKN GLKKGPWTPE EDQNLVDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHSPRL DLLDLSSILS SSLYNASQHH HHQMNNMTRF LGVQPVVNPE LLKLATSLMS  180
SSSSSQRGSN QNSNFYLPSS HEVDQNQLCG TIHNNNPQLQ QVLLQPNQLH HEISAAPGCP  240
TLDNMPCVPL SDEGHDLSNL TNFSSPSSQI SEWQSSTTAT TSGMLSNFNE DCVPCLPSYG  300
AYGNYGHDDH HYQTITVVDP STESFQSNNS NQNFGFTTSV LSTPSSSPTT VLNSNSTTYL  360
TSSTEDERES YCSSMLKFEI SDILDVNEFM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	1e-99	MYB family protein