PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON85806.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MYB
Protein Properties Length: 308aa    MW: 34922.8 Da    PI: 4.8153
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON85806.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++lv ++k++G  +W+  ++  g+ R++k+c++rw +yl
       PON85806.1 14 KGVWSPEEDQKLVAYIKRYGIWNWSEMSKAAGLARSGKSCRLRWMNYL 61
                     799*****************99************************97 PP
2Myb_DNA-binding52.98.3e-1768112248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g++++eE e ++ +++ lG++ W++Ia++++ gRt++++k++w+++l
       PON85806.1  68 GNFSKEEKETIIALHETLGNR-WSAIAAKLP-GRTDNEVKNYWHTHL 112
                      89*******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MGKTWRCEKT HLNKGVWSPE EDQKLVAYIK RYGIWNWSEM SKAAGLARSG KSCRLRWMNY  60
LRPDIKHGNF SKEEKETIIA LHETLGNRWS AIAAKLPGRT DNEVKNYWHT HLKKSPKQLR  120
RANSSANCTT SATNSTLSAT ELEAAKPPNS NDDELASPDI DNNLSESITE ISFPHEPSES  180
SKLEGSCNIH LVPLHDELVS TQDFSLLAPM NCETGETQNV NQTILNNAAE TFEDTIQTQP  240
VENGGLCTPE DAQAMFIDHP NYGQLIGPSS STTSEAMYWQ QEPIWPYDHF YELEYLCNDW  300
VNYMDTIF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-53MYB family protein