PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON85875.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

LBD

Protein Properties

Length: 183aa MW: 20408.1 Da PI: 7.0903

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON85875.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.9	9.5e-45	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +la++++ PON85875.1 6 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVHQRGDAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLEMQLAVAQA 104 7**********************************************************************************************9998 PP DUF260 100 e 100 e PON85875.1 105 E 105 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence
MGGSSPCASC KLLRRRCAKD CIFAPYFPSD DPHKFAIVHK VFGASNVSKM LQELPVHQRG 60 DAVSSLVYEA NARVRDPVYG CVGAISFLQN QVSQLEMQLA VAQAEILCIQ MQQEPPTLPT 120 QIDHHHHHHQ DHDQKPLLLS NSATSSTITN FSTNIPQYLT FSSSSNINHV MQDPTLQRES 180 LWT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-76	LBD family protein