PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON85938.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 371aa MW: 40792.1 Da PI: 6.2859

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON85938.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.1	3.5e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl PON85938.1 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	45.5	1.7e-14	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l PON85938.1 67 RGNFTPHEEGMIIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MGRPPCCDKV GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLMRCS KSCRLRWTNY 60 LRPGIKRGNF TPHEEGMIIH LQALLGNKWA AIASYLPQRT DNDIKNYWNT HLKKKLKKFQ 120 SALDPQNNNI NNINMATISD STTSAHQFVS NKSSIITSNS FCTDRNVSSH GSGGGSPSDN 180 NLSLRQSSSS SSFTIYASST ENISRLLEGW MRSSPKTDNN NNIDGIPSGG GGAMGMKIEQ 240 QEAEAGGGGG DVDLVSHDEF DSILSFENVN NNNNVSSWDR SSTNNCESST TPNVKGTTCA 300 HMDQDHDDEQ MMIKVHHVVA EKVNKQRSEN SSSTTNNPPL SFLEKWLLDE TSTSATAGQV 360 EEMMELSPIL F

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MGRPPCCDKV GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TPHEEGMIIH LQALLGNKWA AIASYLPQRT DNDIKNYWNT HLKKKLKKFQ  120
SALDPQNNNI NNINMATISD STTSAHQFVS NKSSIITSNS FCTDRNVSSH GSGGGSPSDN  180
NLSLRQSSSS SSFTIYASST ENISRLLEGW MRSSPKTDNN NNIDGIPSGG GGAMGMKIEQ  240
QEAEAGGGGG DVDLVSHDEF DSILSFENVN NNNNVSSWDR SSTNNCESST TPNVKGTTCA  300
HMDQDHDDEQ MMIKVHHVVA EKVNKQRSEN SSSTTNNPPL SFLEKWLLDE TSTSATAGQV  360
EEMMELSPIL F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	1e-90	MYB family protein