PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON86153.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 359aa MW: 40265.5 Da PI: 6.1258

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON86153.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.9	2.7e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv+ ++++G g+W++ +r g++R++k+c++rw +yl PON86153.1 14 KGPWTPEEDQKLVKFIQKHGHGSWRALPRLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	56.7	5.6e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++l PON86153.1 67 RGKFSQEEEETILNLHSILGNK-WSAIASHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MGRSPCCDES GLKKGPWTPE EDQKLVKFIQ KHGHGSWRAL PRLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SQEEEETILN LHSILGNKWS AIASHLPGRT DNEIKNFWNT HLKKKLIQMG 120 IDPMTHRPRT DIFSSLPHLI ALANLKELMD HPWEEHAVRL QAEAVQNMAK LQYLQYLLQP 180 PANLNSINGN QTNNLNNLTT SDMETINLLN SLSSFKDNPA FDSPQFQSLT LQSVDGSIPF 240 AHLPDLKIPC SNRDERPVVL NKQTAVNDND QVQDYAVFNN NQLGQDEMIF SAGLSPWQLP 300 PSECTTPSPP MGAPVAAPET SVSNLQADAC NIINSSYGEV THSVWPDLIL DDTLFQDLA

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MGRSPCCDES GLKKGPWTPE EDQKLVKFIQ KHGHGSWRAL PRLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQEEEETILN LHSILGNKWS AIASHLPGRT DNEIKNFWNT HLKKKLIQMG  120
IDPMTHRPRT DIFSSLPHLI ALANLKELMD HPWEEHAVRL QAEAVQNMAK LQYLQYLLQP  180
PANLNSINGN QTNNLNNLTT SDMETINLLN SLSSFKDNPA FDSPQFQSLT LQSVDGSIPF  240
AHLPDLKIPC SNRDERPVVL NKQTAVNDND QVQDYAVFNN NQLGQDEMIF SAGLSPWQLP  300
PSECTTPSPP MGAPVAAPET SVSNLQADAC NIINSSYGEV THSVWPDLIL DDTLFQDLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	4e-99	MYB family protein