PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON86176.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MYB_related
Protein Properties Length: 358aa    MW: 39600.8 Da    PI: 10.7279
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON86176.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.95.5e-14136180347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + ++lG+g+W+ I++ + ++Rt+ q+ s+ qky
       PON86176.1 136 PWTEEEHRIFLVGLEKLGKGDWRGISKNFVTTRTPTQVASHAQKY 180
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    
MGRKCSHCGE MGHNSRTCNS RRRSHELILG GGRQLRLFGV QLELLSNSSP SSSSRLSSLD  60
INRRKSFSMD CLSSSSSPAL FAASSSIPSS SSSSSSRISC SSTTTTIDEI SDKLSNGYLS  120
DGLMARAQLE RKKGVPWTEE EHRIFLVGLE KLGKGDWRGI SKNFVTTRTP TQVASHAQKY  180
FLRQNTLLNK KKRRPSLFDV GRDQLLSLQM VNINMSKPGE TSITHHDHPS LGFSAKTMMT  240
VPTSQLLHVK YSSTTTSTKF DASKIDHSEW PIFMNHHHGH DHHRHCQAPA VRIFNESLDS  300
RIRPSVSSSS TKAHSLQNST TSTNATPDLE LKLGAPMPLR RTKPCPRQSL LFGPISVT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190194KKKRR
2190195KKKRRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.13e-39MYB_related family protein