PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON86368.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 369aa    MW: 41332.2 Da    PI: 4.4381
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON86368.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.62.1e-152361745
                HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                sn  v+fskRr+g++ KA EL++ C a++a++++s+tg+
  PON86368.1 23 SNIFVSFSKRRKGLFQKAAELCTKCHAQIAIVVLSPTGN 61
                6677*********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    
MAKRSRDNSS MEEEQERAQL QASNIFVSFS KRRKGLFQKA AELCTKCHAQ IAIVVLSPTG  60
NPFSFGHSSV DDVLRHYLSN TTMGPPNFIT DEHRNQTQRI EGLKLSLKQK KPQIDDRETR  120
VVSELKRWVE RECEERKTVA ELEFLREKFN TLLGKITRRL ASSSTTCLGG GGGGGEKDQG  180
FDSVCPKSTE FVQNDNMLQH LNTASNLDLG FADHPIDDMS YAKYGTSSNF PLNGFTCQNS  240
EFVENDNNNN FQFHSSDLEF LDHPLSDVLY ANDVGPSSSG GDAGSHADDG FACQTDTDFI  300
ASNDMFQFTS SDLEFLDHTL NDTSYANYGF TFQDNDFVGN DNMYQFDGSN LEFLDYPLDA  360
TSYAPCYES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-20M-type_MADS family protein