PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON86387.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 340aa MW: 38450.6 Da PI: 5.5624

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON86387.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.7	1.5e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l +++k +G g W + +++ g++R +k+c++rw++yl PON86387.1 14 RGAWTAMEDKILTEYIKIHGEGKWGSLPERAGLKRFGKSCRLRWLNYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	47.9	3.1e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E++l+++ +++lG++ W++Ia +++ gRt++++k++w++ PON86387.1 67 RGNITSDEEDLIIRIHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110 7999****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MGRSTPCSKE DLNRGAWTAM EDKILTEYIK IHGEGKWGSL PERAGLKRFG KSCRLRWLNY 60 LKPGIKRGNI TSDEEDLIIR IHNLLGNRWS LIAGRLPGRT DNEIKNYWNT NILKKIQANS 120 LKSNHTTSRK PSSNQSCALV PQQPSYKIHN TTTSRVVRTK ATRCTKVVLL HQEPQNKVVL 180 LGHDNEMNGG GSTSIDDHNH DHDHDDHRCS NTSEPPVDEV PSAVDYDHDQ CVNLNCEQTF 240 NDVPDKSNSS SQFMNVDFGT DDQDDFLSQF LNIDFGFNDD LAEKIISSSN SKGNSCSKSE 300 KENETFLFRH DMPFDLDVEP ATDSLIDQAD DDMDWLKGLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	3e-65	MYB family protein