PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON86455.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 536aa MW: 60937.3 Da PI: 7.0011

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON86455.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.7	6.2e-09	56	85	1	30
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 rg WTteEd ll ++v+++ g++Wk I ++ PON86455.1 56 RGGWTTEEDNLLSELVRKYNGKNWKMIGEY 85 789***********************9875 PP
2	Myb_DNA-binding	55.6	1.2e-17	153	199	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WTteEd ll ++v+++ g++Wk Ia++++ Rt+ qc +rwqk+l PON86455.1 153 RGGWTTEEDNLLSELVRKYNGKNWKMIAACLP-PRTDVQCLHRWQKVL 199 789***************************.9*********986 PP
3	Myb_DNA-binding	56.6	5.8e-18	205	251	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll++ +++G ++W+++a++++ gR +kqc++rw+++l PON86455.1 205 KGSWTEEEDDLLIEQAEKYGYKRWSAVAKCLP-GRIGKQCRERWRNHL 251 799***************************.***********97 PP
4	Myb_DNA-binding	50.3	5.5e-16	257	300	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r++WT+eE+ l+ +++ G++ W+ Iar ++ gRt++ +k++w++ PON86455.1 257 RDAWTEEEESTLAYYHQICGNK-WADIARFLP-GRTENAIKNHWNS 300 789*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence
MCKRFVEIYN MVQVKEEIED YAVDSDKEIG LIYDSPVLRS TSRLGRKTGP TRRSTRGGWT 60 TEEDNLLSEL VRKYNGKNWK MIGEYDPXLG VLSLICMSSE RFVEIYTMVQ VKEEIEDYTE 120 DSDKEIGLIY DSPVLRSTSR LGRTTGPTRR STRGGWTTEE DNLLSELVRK YNGKNWKMIA 180 ACLPPRTDVQ CLHRWQKVLN PELVKGSWTE EEDDLLIEQA EKYGYKRWSA VAKCLPGRIG 240 KQCRERWRNH LDPTIKRDAW TEEEESTLAY YHQICGNKWA DIARFLPGRT ENAIKNHWNS 300 AKKKVGSQSP DGFYTNISPV AHPEITESPK RLMGFNLELE NLTVTNQTHE PFATSLTLGF 360 DENIGQVEKR GKNQKYPDCP TGTYCDCLAH EPPSSQDVGT SVDLNGFSSA DVRRVPDPNG 420 SYCYTTPTKL SPESILRKSA MTFTNTPSII RKRRHKTLCS SFSDVSCSPT WTISSAHEKD 480 VNSTNFPNSK PAFISTHLCT PQTLVAVKSL GRRLEYAFNE AEDSSALYFP DVGINM

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence

MCKRFVEIYN MVQVKEEIED YAVDSDKEIG LIYDSPVLRS TSRLGRKTGP TRRSTRGGWT  60
TEEDNLLSEL VRKYNGKNWK MIGEYDPXLG VLSLICMSSE RFVEIYTMVQ VKEEIEDYTE  120
DSDKEIGLIY DSPVLRSTSR LGRTTGPTRR STRGGWTTEE DNLLSELVRK YNGKNWKMIA  180
ACLPPRTDVQ CLHRWQKVLN PELVKGSWTE EEDDLLIEQA EKYGYKRWSA VAKCLPGRIG  240
KQCRERWRNH LDPTIKRDAW TEEEESTLAY YHQICGNKWA DIARFLPGRT ENAIKNHWNS  300
AKKKVGSQSP DGFYTNISPV AHPEITESPK RLMGFNLELE NLTVTNQTHE PFATSLTLGF  360
DENIGQVEKR GKNQKYPDCP TGTYCDCLAH EPPSSQDVGT SVDLNGFSSA DVRRVPDPNG  420
SYCYTTPTKL SPESILRKSA MTFTNTPSII RKRRHKTLCS SFSDVSCSPT WTISSAHEKD  480
VNSTNFPNSK PAFISTHLCT PQTLVAVKSL GRRLEYAFNE AEDSSALYFP DVGINM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	3e-66	MYB family protein