PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON86565.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family LBD
Protein Properties Length: 182aa    MW: 19804.5 Da    PI: 8.5847
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON86565.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.47.4e-41121111100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk+l+r+C++ C++apyf +++pkkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i  lq+++ +l+ ela++++
  PON86565.1  12 SCAACKFLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQRELAVARA 110
                 6**********************************************************************************************9987 PP

      DUF260 100 e 100
                 +
  PON86565.1 111 R 111
                 5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    
MKGGHEPRSS SSCAACKFLK RRCTPTCIFA PYFRSDEPKK FAKVHKVFGA SNVSKILIEV  60
PEEQREDTVN SLAYEAEARL RDPVYGCIGA IALLQRKMVE LQRELAVARA RLARFAATSS  120
SSSSSSYSPI LDGRLISEAA FSGLPAACAG LNSTNDGLIS QSSFEFGQNG SIYDFSFVPY  180
IL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.12e-57LBD family protein