PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON86566.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family Trihelix
Protein Properties Length: 268aa    MW: 29695.4 Da    PI: 9.6252
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON86566.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix39.71.3e-1223105185
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                 +W++  + +Liea  ++  +l+rg+l++++W+ev++++  r+ g    ++ +qCk++++ l+k+yk +k   +       s ++++ +l
  PON86566.1  23 CWSEGATSTLIEAWGDRYLQLNRGNLRQKDWKEVADAVngRDNGAkpYKTDVQCKNRIDTLKKKYKLEKSKPIP------SAWAFYPRL 105
                 7*************************************9955555224799***************99988775......357777666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MDRPGTTAAA AASRPQGGGR EDCWSEGATS TLIEAWGDRY LQLNRGNLRQ KDWKEVADAV  60
NGRDNGAKPY KTDVQCKNRI DTLKKKYKLE KSKPIPSAWA FYPRLDFLIG SDNKKPTTTT  120
TVTLTIKSGK PKPNSRPGPK LPAVKSPESS AGEEGDDDDD DVDVDENGGD GGGVGSGGRV  180
VMRKHRLEAV DISEGAAFRE LARAILKFGE IYERIESSKQ QRIMELERQR MEFAKDLEFQ  240
RLNMFMDAQL ELQKANKRAK YAPGSGKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.11e-71Trihelix family protein