PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON86574.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 253aa MW: 28089.6 Da PI: 7.0362

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON86574.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.3	7.1e-18	8	53	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l ++v+q+G+++W++I+ ++ gR++k+c++rw + PON86574.1 8 KGSWSPQEDATLMKLVEQHGPRNWSLISTGIQ-GRSGKSCRLRWCNQ 53 799***************************.*********985 PP
2	Myb_DNA-binding	27.7	6.3e-09	62	90	3	32
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg 32 ++T+ Ed +++a++++G++ W+tIar ++ PON86574.1 62 PFTPAEDATIIRAHALHGNK-WATIARLLP 90 89****************.*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence
MKGGDRIKGS WSPQEDATLM KLVEQHGPRN WSLISTGIQG RSGKSCRLRW CNQLSPSVQH 60 RPFTPAEDAT IIRAHALHGN KWATIARLLP XXXXXXXXXX XXRRRRAAAS ASSDSNSPPK 120 GLGPGPEEED ESSESEPDPA VKRRRLRPSP ERGGGIETSL TLSPPGESVV SVPSAEEKVE 180 NDVVLKREEA VAVAVAVGEE ERCTVDMEME ETCLVTIMQR MIAQEVRNYM DNLRAQDGLR 240 FGFRTSVHRD PYN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	146	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	1e-40	MYB family protein