PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON86601.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

NF-X1

Protein Properties

Length: 862aa MW: 96979.9 Da PI: 8.3047

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON86601.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	18.1	5.7e-06	186	204	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG H+C lCH+GpCp+Cp+ PON86601.1 186 CG-HRCLLLCHPGPCPSCPK 204 .*************96 PP
2	zf-NF-X1	17.6	8.2e-06	241	256	4	19
zf-NF-X1 4 HkCqklCHeGpCppCp 19 H+C+++CH GpCppC+ PON86601.1 241 HQCSEICHDGPCPPCR 256 ***************6 PP
3	zf-NF-X1	17.2	1.1e-05	399	418	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C + C+ G+CppC++ PON86601.1 399 CGRHACRRRCCDGDCPPCSE 418 ******************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 862 aa Download sequence
MPSHNDRLHP PLSDSDADSD NGQPGLESSR HADLSDSIFR SYFEFTGRLQ TTPADLSKIQ 60 SFLTSSSSGA LSCLICLERI RPSDPTWSCT SVCFAVFHLF CIQSWARQAS DLAALRASTR 120 LPIAPNRAAE VSVWNCPKCR FEYTQSQIPK VYLCFCGKLE NPPSDDPWVL PHSCGEVCDR 180 PLKHGCGHRC LLLCHPGPCP SCPKLVKSRC FCGSIEDVRR CGFKDFSCNN VCSKLLDCRA 240 HQCSEICHDG PCPPCRVRGM YRCQCGKREE ERECCDRINF RCENPCEKML GCRRHVCSKG 300 CHSGECGPCP LQGKRTCPCG KRVYEGMSCD VAVPLCGATC DKMLSCGFHR CPERCHRGPC 360 IETCRIVVVK LCRCGSLKKE VPCYQDIACE RKCQRLRDCG RHACRRRCCD GDCPPCSEIC 420 GRKLRCKNHK CPSPCHRGPC APCPVMVTIS CACGETHFEV PCGTEMDQKP PRCPKRCPIK 480 PLCRHGTNIK PHKCHYGACP SCRMLCEEEY PCGHTCKLRC HGPKPPPNPE FTLKPRKKKN 540 VHQSECSPGS SCPPCAELVW RSCVGQHIGA ERMMVCSNGM QFACENLCGN LLPCGNHFCT 600 NTCHSLKTQL CEECNLSCQK ERMPVCPHPC PLPCHPEDCP PCKVLVKRSC HCGSMVHVFE 660 CMYYNTLSEK EQMTVRSCGG PCHRKLPNCT HLCPETCHPG QCPSPEKCSK KVTVRCRCQT 720 LKKEWLCYDV QAAYHDTGSD VKDISKNQYG LGLLPCNSDC KKKVQAVDSE LQLRKSKAME 780 VKEPETEKHV PKRKRRRERV HETKQISTLQ KVATTVKRLL LFAVLVLAVI AVLHYGYKGL 840 LWLSDWMNEV EYQRHRRRHQ RI

Sequence ? help Back to Top

Protein Sequence Length: 862 aa Download sequence

MPSHNDRLHP PLSDSDADSD NGQPGLESSR HADLSDSIFR SYFEFTGRLQ TTPADLSKIQ  60
SFLTSSSSGA LSCLICLERI RPSDPTWSCT SVCFAVFHLF CIQSWARQAS DLAALRASTR  120
LPIAPNRAAE VSVWNCPKCR FEYTQSQIPK VYLCFCGKLE NPPSDDPWVL PHSCGEVCDR  180
PLKHGCGHRC LLLCHPGPCP SCPKLVKSRC FCGSIEDVRR CGFKDFSCNN VCSKLLDCRA  240
HQCSEICHDG PCPPCRVRGM YRCQCGKREE ERECCDRINF RCENPCEKML GCRRHVCSKG  300
CHSGECGPCP LQGKRTCPCG KRVYEGMSCD VAVPLCGATC DKMLSCGFHR CPERCHRGPC  360
IETCRIVVVK LCRCGSLKKE VPCYQDIACE RKCQRLRDCG RHACRRRCCD GDCPPCSEIC  420
GRKLRCKNHK CPSPCHRGPC APCPVMVTIS CACGETHFEV PCGTEMDQKP PRCPKRCPIK  480
PLCRHGTNIK PHKCHYGACP SCRMLCEEEY PCGHTCKLRC HGPKPPPNPE FTLKPRKKKN  540
VHQSECSPGS SCPPCAELVW RSCVGQHIGA ERMMVCSNGM QFACENLCGN LLPCGNHFCT  600
NTCHSLKTQL CEECNLSCQK ERMPVCPHPC PLPCHPEDCP PCKVLVKRSC HCGSMVHVFE  660
CMYYNTLSEK EQMTVRSCGG PCHRKLPNCT HLCPETCHPG QCPSPEKCSK KVTVRCRCQT  720
LKKEWLCYDV QAAYHDTGSD VKDISKNQYG LGLLPCNSDC KKKVQAVDSE LQLRKSKAME  780
VKEPETEKHV PKRKRRRERV HETKQISTLQ KVATTVKRLL LFAVLVLAVI AVLHYGYKGL  840
LWLSDWMNEV EYQRHRRRHQ RI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	792	797	KRKRRR
2	793	797	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein