PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON86801.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 554aa MW: 60638.5 Da PI: 4.9474

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON86801.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.9	9.9e-18	36	83	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ede+l ++vk++G g+W+++ ++ g+ R++k+c++rw ++l PON86801.1 36 KGPWTSGEDEILMEYVKKHGEGNWNAVQKHSGLSRCGKSCRLRWANHL 83 79******************************************9986 PP
2	Myb_DNA-binding	48.1	2.6e-15	89	132	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T++E+ ++++++++G++ W++ a++++ gRt++++k++w++ PON86801.1 89 KGAFTADEERMIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 132 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence
MSRSTNESED ISKYHSESPL LDESNGGSSG GVVLKKGPWT SGEDEILMEY VKKHGEGNWN 60 AVQKHSGLSR CGKSCRLRWA NHLRPNLKKG AFTADEERMI IELHAKMGNK WARMAAHLPG 120 RTDNEIKNYW NTRIKRRQRA GLPLYPPDLC LQAFQENQQG QSTGGLNCGD RGQHDPLQPN 180 SFEIPDVVFD GLKGNSDVLP YVSELPDISM STMLMKGIAS PQYYSFMPPT IHRQKRIRES 240 SDVFPDSSGC VQNGCPLFDQ FQNDTCDKIS SFGPTFQHDL DPNKSLLSFA VTQGSHSLLN 300 GNSSASRPTN GSVKSELPSL QYPETDLGTW GTSPPPPLLE SVDAFIQSPP PVGAFESECS 360 SPRNSGLLDA LLHESKNLSS AKKLSSEKSS NSSSITPCVV ADNCNLNICE TDWEGYREPV 420 SPLGHSATSL FNECISASGS SLDEPQPVET FTGSTVKPEP VDADSIPDKE KEPKKPMDFV 480 RPDALLASDW FEQSSGCGKE RSIMTDTIVT LLGDDLATDY KHMATGSSSQ SQEWGLGYCA 540 WNNMPAVCQM SDLP

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence

MSRSTNESED ISKYHSESPL LDESNGGSSG GVVLKKGPWT SGEDEILMEY VKKHGEGNWN  60
AVQKHSGLSR CGKSCRLRWA NHLRPNLKKG AFTADEERMI IELHAKMGNK WARMAAHLPG  120
RTDNEIKNYW NTRIKRRQRA GLPLYPPDLC LQAFQENQQG QSTGGLNCGD RGQHDPLQPN  180
SFEIPDVVFD GLKGNSDVLP YVSELPDISM STMLMKGIAS PQYYSFMPPT IHRQKRIRES  240
SDVFPDSSGC VQNGCPLFDQ FQNDTCDKIS SFGPTFQHDL DPNKSLLSFA VTQGSHSLLN  300
GNSSASRPTN GSVKSELPSL QYPETDLGTW GTSPPPPLLE SVDAFIQSPP PVGAFESECS  360
SPRNSGLLDA LLHESKNLSS AKKLSSEKSS NSSSITPCVV ADNCNLNICE TDWEGYREPV  420
SPLGHSATSL FNECISASGS SLDEPQPVET FTGSTVKPEP VDADSIPDKE KEPKKPMDFV  480
RPDALLASDW FEQSSGCGKE RSIMTDTIVT LLGDDLATDY KHMATGSSSQ SQEWGLGYCA  540
WNNMPAVCQM SDLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	1e-124	MYB family protein