PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON86819.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 212aa    MW: 24093.5 Da    PI: 9.9876
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON86819.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.46.7e-221861245
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                +i+nk n qvtfskRr g++KKA+EL++LC++e+a+i fs+  k
  PON86819.1 18 KIQNKNNLQVTFSKRRSGLFKKASELCTLCGVEIAIIAFSPAEK 61
                79**************************************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MVKNPMISKG HKKIEMAKIQ NKNNLQVTFS KRRSGLFKKA SELCTLCGVE IAIIAFSPAE  60
KPFAFGHTEF GSIVKRFLTN QNHYSSLASS SSGNTSTTNN NGQLRQNSDH VVVHELNAQL  120
SRLLSELEAE KKKGRELDEM RKAGQRMWWW ESAIDELMSL DELKQLKASL EELKNNVLLT  180
RQAHTMLNNV FEVKRNDFST NKVFNFGSEQ CV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.19e-45M-type_MADS family protein