PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON87008.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C3H

Protein Properties

Length: 308aa MW: 34815.9 Da PI: 9.2147

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON87008.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	47	4.1e-15	238	263	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tG+C+yGd C+FaHg PON87008.1 238 FKTELCNKWQETGECPYGDHCQFAHG 263 79***********************8 PP
2	zf-CCCH	18.5	3.5e-06	276	300	1	25
--S---SGGGGTS.--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaH 25 ykt Cr + G C+yG rC+F H PON87008.1 276 YKTQVCRMVLN-GvVCPYGHRCHFLH 300 78888888888.669*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence
MQKNLATMTS SSSISHGVVS SNSFFLDSDS SSTIAAAAAA IDDHRRRLYH SLLVQDHQEM 60 VNRRSLCLNR LRQVAAEAGD LRRENSHLRS VNVELNKQLR LLIQSTLRNQ NRSPGSRTYT 120 TGSTRFWDRE EGSHGHERES QIRTGVNGIR AENSAELLDM YSRLPKSISV KCDDYLELEA 180 QGAIVNNGGR SRDSTRFRTS SLQNVKQKVY VGGGGKKGNY HHGHEDPVEL EVYKQGTFKT 240 ELCNKWQETG ECPYGDHCQF AHGIDELRPV IRHPRYKTQV CRMVLNGVVC PYGHRCHFLH 300 ALSDHKAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	9e-51	C3H family protein