PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON87401.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

bHLH

Protein Properties

Length: 695aa MW: 75668.4 Da PI: 5.3382

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON87401.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.4e-12	518	563	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L PON87401.1 518 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 563 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 695 aa Download sequence
MTDYRIQPTM NLWTDDNASM MEAFMSSSDL SAFWATPPSQ QPPPSAAAAA AHTHHHSQPQ 60 QSSASTSAPP PPHAATQQPQ APPPVAAFNQ ETLQQRLQAL IEGARESWTY AIFWQSSYDY 120 SGATVLGWGD GYYKGEEDKG RGKSKSSASS VAEQEHRKKV LRELNSLISG SASSTDDAVD 180 EEVTDTEWFF LVSMTQSFVN GGGLPGQAFF NSSSVWVAGT DSLANSTCER ARQGQIFGLQ 240 TIVCIPSENG VVELGSTELI FQSSDLMNKV RVLFNFSNLE VGSWPLSGGA PDQGENDPSS 300 FWLNDPSSTA MEVKDSVTTT AGASASVPGS NNPQTSKSTV QFENPSSSSL TENPSAIQRN 360 NQGQQAQTQS FFTRELNFSE YGFEGSSVKN NENSHSLKPE SGEILNFGES KRSSYNGNGN 420 LFSGQSQFAA EENNNTNKKK RSPNSRGSNE EGMLSFTSGV LLPSSGVVKS SGGAGDSDHS 480 DLEASVVREV DSSRVVEPEK RPRKRGRKPA NGREEPLNHV EAERQRREKL NQRFYALRAV 540 VPNVSKMDKA SLLGDAISYI NELKSKLSTA ESDKEDLQKQ MDSMKRELAG KDSRSSSADQ 600 DLSMSNHHGS KLIDLDIDVK IIGWDAMIRI QCSKKNHPAA RLMAALMELD LEVHHASVSV 660 VNDLMIQQAT VKMGSRFYTQ EQLRLALTSK VGDAR

Sequence ? help Back to Top

Protein Sequence Length: 695 aa Download sequence

MTDYRIQPTM NLWTDDNASM MEAFMSSSDL SAFWATPPSQ QPPPSAAAAA AHTHHHSQPQ  60
QSSASTSAPP PPHAATQQPQ APPPVAAFNQ ETLQQRLQAL IEGARESWTY AIFWQSSYDY  120
SGATVLGWGD GYYKGEEDKG RGKSKSSASS VAEQEHRKKV LRELNSLISG SASSTDDAVD  180
EEVTDTEWFF LVSMTQSFVN GGGLPGQAFF NSSSVWVAGT DSLANSTCER ARQGQIFGLQ  240
TIVCIPSENG VVELGSTELI FQSSDLMNKV RVLFNFSNLE VGSWPLSGGA PDQGENDPSS  300
FWLNDPSSTA MEVKDSVTTT AGASASVPGS NNPQTSKSTV QFENPSSSSL TENPSAIQRN  360
NQGQQAQTQS FFTRELNFSE YGFEGSSVKN NENSHSLKPE SGEILNFGES KRSSYNGNGN  420
LFSGQSQFAA EENNNTNKKK RSPNSRGSNE EGMLSFTSGV LLPSSGVVKS SGGAGDSDHS  480
DLEASVVREV DSSRVVEPEK RPRKRGRKPA NGREEPLNHV EAERQRREKL NQRFYALRAV  540
VPNVSKMDKA SLLGDAISYI NELKSKLSTA ESDKEDLQKQ MDSMKRELAG KDSRSSSADQ  600
DLSMSNHHGS KLIDLDIDVK IIGWDAMIRI QCSKKNHPAA RLMAALMELD LEVHHASVSV  660
VNDLMIQQAT VKMGSRFYTQ EQLRLALTSK VGDAR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	500	508	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	0.0	bHLH family protein