PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON87449.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 354aa MW: 39826.6 Da PI: 6.6762

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON87449.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.7	3.2e-19	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lvd+++ +G g+W++ ++ g++R++k+c++rw +yl PON87449.1 15 KGPWTPEEDKKLVDYITAHGHGSWRSLPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP
2	Myb_DNA-binding	54.8	2.1e-17	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+ ++++++ lG++ W++Ia +++ gRt++++k++w++yl PON87449.1 68 RGKFSEEEERIIIHLHSVLGNK-WSRIAGHLP-GRTDNEIKNFWNTYL 113 89******************.*****.***********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MGRSPCCDEK ADLKKGPWTP EEDKKLVDYI TAHGHGSWRS LPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGK FSEEEERIII HLHSVLGNKW SRIAGHLPGR TDNEIKNFWN TYLRKKLLHM 120 GIDPNTHKPR TDLNHLLNLS QLLSSSHLSN LIMNTTSTTI STPLENALKL QADAAHQYMA 180 KIRMLQNLMQ VMNSSSTISN TAQNIENIIN PSTLLGVQND LHTFEGQITG YDQIQNLGNF 240 VPLCPNEYSK AIDMNPWASS ESGGRTGGGD GVDHQKNSAD DDGFHDQNID QLPRLVSSAP 300 FTGRTSFSSN HTENKSDHSA IVNSPISTVF EDWEKLMDDE STESYWKDIL ELMS

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MGRSPCCDEK ADLKKGPWTP EEDKKLVDYI TAHGHGSWRS LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSEEEERIII HLHSVLGNKW SRIAGHLPGR TDNEIKNFWN TYLRKKLLHM  120
GIDPNTHKPR TDLNHLLNLS QLLSSSHLSN LIMNTTSTTI STPLENALKL QADAAHQYMA  180
KIRMLQNLMQ VMNSSSTISN TAQNIENIIN PSTLLGVQND LHTFEGQITG YDQIQNLGNF  240
VPLCPNEYSK AIDMNPWASS ESGGRTGGGD GVDHQKNSAD DDGFHDQNID QLPRLVSSAP  300
FTGRTSFSSN HTENKSDHSA IVNSPISTVF EDWEKLMDDE STESYWKDIL ELMS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	263	269	GGRTGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02940.1	3e-84	MYB family protein