PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON87581.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 434aa MW: 46947.4 Da PI: 6.5136

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON87581.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.8	2.2e-17	60	105	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v ++G ++W++Iar ++ gR++k+c++rw + PON87581.1 60 KGPWSPEEDAVLSRLVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 105 79****************************.*********985 PP
2	Myb_DNA-binding	55.3	1.5e-17	112	156	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T++Ed ++v a++ +G++ W++Iar ++ gRt++ +k++w++ PON87581.1 112 RKPFTEDEDRIIVTAHAAHGNK-WAAIARLLP-GRTDNAIKNHWNST 156 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MTVPNDAVSN DDDRTDELEL GAGGGGGGEA ELMELGEGSG GGGGGGGGGG GGGGRGARVK 60 GPWSPEEDAV LSRLVSKFGA RNWSLIARGI PGRSGKSCRL RWCNQLDPCV KRKPFTEDED 120 RIIVTAHAAH GNKWAAIARL LPGRTDNAIK NHWNSTLKRK YPGFGRFETA PGDMMIDGSL 180 DKTRASSEET LSMETMNPLK NLEGRDISVD NRPIQYENRV QANEGCIAET DYHKLVSEAE 240 HHPTVSRPVA RISAFRAYNP LSLLTHSSEF PRTVPTCGPL FQSSKSELGA SKLFEDVHSE 300 PMVPFQCGRG CCANSSQRQS HSSLLGPEFL EYEEGPSFSS HELISITTDL NNIAWIKSGL 360 ENRRPRIPDH AAIQEVSRGS SSTSQAGLLA QNKVNDHMRF EEGRSKLMGM MTDVLSSQVP 420 RRSFAMPAEV EGLS

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MTVPNDAVSN DDDRTDELEL GAGGGGGGEA ELMELGEGSG GGGGGGGGGG GGGGRGARVK  60
GPWSPEEDAV LSRLVSKFGA RNWSLIARGI PGRSGKSCRL RWCNQLDPCV KRKPFTEDED  120
RIIVTAHAAH GNKWAAIARL LPGRTDNAIK NHWNSTLKRK YPGFGRFETA PGDMMIDGSL  180
DKTRASSEET LSMETMNPLK NLEGRDISVD NRPIQYENRV QANEGCIAET DYHKLVSEAE  240
HHPTVSRPVA RISAFRAYNP LSLLTHSSEF PRTVPTCGPL FQSSKSELGA SKLFEDVHSE  300
PMVPFQCGRG CCANSSQRQS HSSLLGPEFL EYEEGPSFSS HELISITTDL NNIAWIKSGL  360
ENRRPRIPDH AAIQEVSRGS SSTSQAGLLA QNKVNDHMRF EEGRSKLMGM MTDVLSSQVP  420
RRSFAMPAEV EGLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	2e-96	MYB family protein