PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON88068.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 28104.8 Da    PI: 6.6829
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON88068.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.21.2e-29958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                +rienk+nrqv+fskRrng+lKKA+ELSvLCdaev viifss+gkl e+ 
  PON88068.1  9 ERIENKINRQVSFSKRRNGLLKKAYELSVLCDAEVGVIIFSSRGKLSEFG 58
                69**********************************************95 PP
2K-box73.94.4e-25741731100
       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 y++s++++    +a++l  e+ kL++++e+Lqr  Rh+lGe+Le+L  keLq+Le++L++ l++ R++ +++++e +eel++k ++l+e +++L+ kl+
  PON88068.1  74 YASSQDNNIVGDEAQNLLLEIPKLQAKYESLQRAERHFLGENLEELGQKELQNLEKRLDRTLTQARQRTMHMMVERLEELRRKVRDLEELHEQLKPKLD 172
                 6678888888888**********************************************************************************9998 PP

       K-box 100 e 100
                 e
  PON88068.1 173 E 173
                 6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MGRRRVVLER IENKINRQVS FSKRRNGLLK KAYELSVLCD AEVGVIIFSS RGKLSEFGST  60
DVNTTLERYR QFCYASSQDN NIVGDEAQNL LLEIPKLQAK YESLQRAERH FLGENLEELG  120
QKELQNLEKR LDRTLTQARQ RTMHMMVERL EELRRKVRDL EELHEQLKPK LDEVRNMCLC  180
IESQGDLNIV ADKPDSTQPN HIESESTADK GPYPRFLSKE TIADHEGRII GDGSSRNQDW  240
FL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.12e-55MIKC_MADS family protein