PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON88073.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MIKC_MADS

Protein Properties

Length: 215aa MW: 25218 Da PI: 8.4616

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON88073.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.1	1.7e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvtfskRr g+lKKA+ELSvLCd+evaviifs++g+lye+ss PON88073.1 9 KRIENATNRQVTFSKRRSGLLKKAHELSVLCDVEVAVIIFSQKGRLYEFSS 59 79***********************************************96 PP
2	K-box	65.5	1.8e-22	77	170	4	97
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 ++++ +e+ + +l+ e + L k+ie L+ ++R+llG d++s+s++eLq++ +Le+sl++iR++K++l++eqie+l ke+ l een +Lr k PON88073.1 77 RTNNIEAEQYMRQLKLETSELAKKIELLEVSKRKLLGHDISSCSYEELQEMDCRLERSLRSIRARKDQLFKEQIEQLEAKERLLLEENIQLRGK 170 44455788889999*****************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence
MVRGKIQMKR IENATNRQVT FSKRRSGLLK KAHELSVLCD VEVAVIIFSQ KGRLYEFSST 60 DMQKMIERYR KHAKDERTNN IEAEQYMRQL KLETSELAKK IELLEVSKRK LLGHDISSCS 120 YEELQEMDCR LERSLRSIRA RKDQLFKEQI EQLEAKERLL LEENIQLRGK SAIGANLWQP 180 LTQEKEVVTY CSQSTDSTNT ELETELYIGL PEIRC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62165.3	2e-85	MIKC_MADS family protein