PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON88465.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GRAS
Protein Properties Length: 550aa    MW: 61693.1 Da    PI: 7.1619
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON88465.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4549.7e-1391815502374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 +++L+ cA+avs++dl  aq+l+ +l+ ++s +g+p+qRl ay++e+L arla+s+s+++kal+++e +   sse l+++++++e++P++kf+++ aN 
  PON88465.1 181 KQVLICCAKAVSDNDLLVAQWLMDELRRMVSVSGEPIQRLGAYMLEGLVARLASSGSNICKALKCKEPA---SSELLSYMHILYELCPYFKFGYMSANG 276
                 689*****************************************************************9...9************************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 aI ea++ e+rvHiiDf+i qG+QW++L+qa+a+Rp+gpp++RiTg++++ s   +   l+ +g++L+k+Ae+++vpfefn+ va + ++++le+L+++
  PON88465.1 277 AIAEAMKDENRVHIIDFQIAQGGQWITLIQAFAARPGGPPHIRITGIDDSMSAyaRGGGLSIVGKKLSKLAETFKVPFEFNA-VAISGSEVQLEDLAIR 374
                 *************************************************888789999************************.6889************ PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 pgEalaVn+++ lh++ desvs++++rd++L+lvkslsPkvv++veqe+++n++ F+ rf+e+l+yy+a+f+s++++l+re++eri+vE+++l+re+vn
  PON88465.1 375 PGEALAVNFAFVLHHMADESVSTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFFPRFIETLNYYTAMFESIDVTLSREHKERINVEQHCLAREVVN 473
                 *************************************************************************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 ++aceg+er+erhe l+kW+ r+++aGF+p+pls+ +++++k+ll+++ ++ yr+ee++g+l+lgW++r Lv+ SaW+
  PON88465.1 474 IIACEGSERVERHELLGKWKLRFKMAGFTPYPLSSLVNATIKTLLENYCKK-YRLEERDGALYLGWMNRYLVTSSAWK 550
                 *************************************************66.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    
MQRSQKRRSS SMSNRLYHQP PIQDVESYCL PQFRSLDREL CYRDSGRSHG AHLSAKNSFQ  60
LYSTLESSSA NGSVNMYKSP STVSFSPSGS PMSQQDSHSY LPDQHNSPEN TYGSPISGSC  120
VTDDMSDWKY KLKELESAML GPDLSILDNY EIAFQKGTSN SSNETESWGQ IMESISKRDV  180
KQVLICCAKA VSDNDLLVAQ WLMDELRRMV SVSGEPIQRL GAYMLEGLVA RLASSGSNIC  240
KALKCKEPAS SELLSYMHIL YELCPYFKFG YMSANGAIAE AMKDENRVHI IDFQIAQGGQ  300
WITLIQAFAA RPGGPPHIRI TGIDDSMSAY ARGGGLSIVG KKLSKLAETF KVPFEFNAVA  360
ISGSEVQLED LAIRPGEALA VNFAFVLHHM ADESVSTQNH RDRLLRLVKS LSPKVVTLVE  420
QESNTNTAAF FPRFIETLNY YTAMFESIDV TLSREHKERI NVEQHCLARE VVNIIACEGS  480
ERVERHELLG KWKLRFKMAG FTPYPLSSLV NATIKTLLEN YCKKYRLEER DGALYLGWMN  540
RYLVTSSAWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein