PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON88543.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 71aa    MW: 8766.89 Da    PI: 6.786
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON88543.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.86.7e-143371751
                HHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF 17 rngilKKAeELSvLCdaevaviifsstgklyeyss 51
                r g++KKA  LSvL  ++va++ifs++g+lye+s+
  PON88543.1  3 RDGLIKKARNLSVLRYIDVALLIFSNQGHLYEFSN 37
                79*******************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    
MHRDGLIKKA RNLSVLRYID VALLIFSNQG HLYEFSNIND SFTMWTIWFE RNQNVYYETH  60
YDYCNEVNLW R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.12e-08MIKC_MADS family protein