PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON88625.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 360aa MW: 39999.8 Da PI: 5.1983

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON88625.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.2	7.9e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ l+++++++G+g+W+ ++ g+ R++k+c++rw +yl PON88625.1 14 KGPWTPEEDLMLINYIQKHGPGNWRNLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	53.5	5.5e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ PON88625.1 67 RGRFSFEEEETIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MGRAPCCDKN GLKKGPWTPE EDLMLINYIQ KHGPGNWRNL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHSVLGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG 120 IDPVTHAPRL DFLDLSSILA SSSLCNPSLL NLSSLLGAQA LFNPELLRLA STLLSLNNKQ 180 DQNINPELFN SQNLQENQLC SNQIPPLVQP NINHDQLQTP IPEGFSMQPN MTNLISSSST 240 PISTQENVNT SAINPSSGLN ENVAVSQPSY VDCGSNTNNP SVVADLPENS FFQSLLDGYS 300 DKVFGFDSVI STPSSPTPLN SSSTYNVNST SSTEDEREIS YCSSLLKFEI PESLDINDFL

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MGRAPCCDKN GLKKGPWTPE EDLMLINYIQ KHGPGNWRNL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHSVLGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHAPRL DFLDLSSILA SSSLCNPSLL NLSSLLGAQA LFNPELLRLA STLLSLNNKQ  180
DQNINPELFN SQNLQENQLC SNQIPPLVQP NINHDQLQTP IPEGFSMQPN MTNLISSSST  240
PISTQENVNT SAINPSSGLN ENVAVSQPSY VDCGSNTNNP SVVADLPENS FFQSLLDGYS  300
DKVFGFDSVI STPSSPTPLN SSSTYNVNST SSTEDEREIS YCSSLLKFEI PESLDINDFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	1e-91	MYB family protein