PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON88640.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

DBB

Protein Properties

Length: 235aa MW: 25833.3 Da PI: 4.7666

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON88640.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.5	2.4e-07	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e+ +++ C ++ lC++C +e H H++ PON88640.1 4 QCDVCEKAPATVICCADEAALCAKCDVEVHAAnklaskHQR 44 7*****************************65667777765 PP
2	zf-B_box	30.8	5.9e-10	53	95	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + +kC+ +++k++ +fC +++ l+C+dC + +H+ H+ PON88640.1 53 KLPKCDICQDKPAFIFCVEDRALFCQDCDEPIHSAnslssnHQ 95 789******************************6566777776 PP

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence
MKIQCDVCEK APATVICCAD EAALCAKCDV EVHAANKLAS KHQRLLLQCL SNKLPKCDIC 60 QDKPAFIFCV EDRALFCQDC DEPIHSANSL SSNHQRLLAT GIQVALSSSC NKETKKSCLE 120 PPNRNPPQVS TKVPAQSLTS SWSVDDLLHF SDFESSDKQK ESLEFGELEW LADSGLLGEP 180 IPHETLAAAE VPQLPVSQSS NVISYRPTKS STPFKKPRLD MPVEDDEYFI VPDLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06040.1	2e-98	DBB family protein